9th International Conference on Practical Applications of Computational Biology and Bioinformatics

Front Cover
Ross Overbeek, Miguel P. Rocha, Florentino Fdez-Riverola, Juan F. De Paz
Springer, May 24, 2015 - Technology & Engineering - 148 pages

This proceedings presents recent practical applications of Computational Biology and Bioinformatics. It contains the proceedings of the 9th International Conference on
Practical Applications of Computational Biology & Bioinformatics held at University of Salamanca, Spain, at June 3rd-5th, 2015. The International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB) is an annual international meeting dedicated to emerging and challenging applied research in Bioinformatics and Computational Biology. Biological and biomedical research are increasingly driven by experimental techniques that challenge our ability to analyse, process and extract meaningful knowledge from the underlying data. The impressive capabilities of next generation sequencing technologies, together with novel and ever evolving distinct types of omics data technologies, have put an increasingly complex set of challenges for the growing fields of Bioinformatics and Computational Biology. The analysis of the datasets produced and their integration call for new algorithms and approaches from fields such as Databases, Statistics, Data Mining, Machine Learning, Optimization, Computer Science and Artificial Intelligence. Clearly, Biology is more and more a science of information requiring tools from the computational sciences.

 

Contents

A Preliminary Assessment of Three Strategies for the AgentBased Modeling of Bacterial Conjugation
1
2 Carotenoid Analysis of Cassava Genotypes Roots Manihot Esculenta Crantz Cultivated in Southern Brazil Using Chemometric Tools
11
3 UVVisible Scanning Spectrophotometry and Chemometric Analysis as Tools to Build Descriptive and Classification Models for Propolis from Sout...
19
4 UVVisible SpectrophotometryBased Metabolomic Analysis of Cedrela Fissilis Velozzo Meliaceae Calluses A Screening Tool for Culture Medium C...
29
An Integrated Computational Platform for Metabolomics Data Analysis
37
Compound Identification in Comprehensive Gas ChromatographyMass SpectrometryBased Metabolomics by Blind Source Separation
49
Improving Automation of Targeted Metabolomics in Multimatrix Datasets of 1HNMR Spectra
59
A New Dimensionality Reduction Technique Based on HMM for Boosting Document Classification
69
A Text Mining Approach for the Extraction of Kinetic Information from Literature
89
11 A Novel Search Engine Supporting Specific Drug Queries and Literature Management
99
12 Identification of a Putative Ganoderic Acid Pathway Enzyme in a Ganoderma Australe Transcriptome by Means of a Hidden Markov Model
107
13 A New Bioinformatic Pipeline to Address the Most Common Requirements in RNAseq Data Analysis
117
An Application to Brain Tumor Grade Determination
127
15 Obtaining Relevant Genes by Analysis of Expression Arrays with a Multiagent System
136
Diagnostic Knowledge Extraction from MedlinePlus An Application for Infectious Diseases
146
Author Index
147

An Application for Infectious Diseases
79

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